Something is seriously wrong. ...

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Something is seriously wrong. 2.4 million E.coli/100 is raw sewage. It could not be that high if you had free chlorine present. Probably not even with combined, unless you have high turbidity and lots of particulates that are protecting aggregations of E. coli.  Has it been filtered? It is very difficult  (maybe impossible) to maintain a free chlorine residual in the presence of all the ammonia. Did you really get to breakpoint? Not likely. What test methods are you using for chlorine residuals and E coli counts. Maybe you need a different analyst or different metering.

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