It is best to use COD, ...

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It is best to use COD, rather than BOD, as the primary metric for the plant load. COD is a conserved parameter (i.e. you can do a mass balance on COD through the plant) whereas BOD is just a measure of what is oxidised by the inoculum in 5 days. Nearly all of the COD will be removed in your treatment plant, either by oxidation or assimilation, so the COD will give a better estimate of the oxygen demand. 

As has been said by others, peroxide might increase the BOD by converting slowly-degradable organics into measurable BOD, whereas peroxide will cause a reduction in COD.

You haven't specified what problem you're having with a high BOD. Is it just that you are having problems measuring BOD accurately or is your plant overloaded (high COD load)?