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The Water Network research team has consolidated an answer to the above question. 
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p317.gifPit latrine is a toilet type which stores human faeces in a hole in the ground.

They do not use water or use only a couple of liters per flush for pour-flush pit latrines.

Pit latrines consist of 3 parts:

Pits are at least 3 m deep with an area of 1 m2.

When building a pit latrine a few things need to be taken into consideration:

When the pit is almost full (0.5 m of thee top), it should be emptied or a new pit should be constructed.

If faecal sludge management is not carried out properly, water pollution along with public health risks may occur.

 

During flooding the following things can happen to pit latrines:

 

The solutions for pit latrines in flood-prone areas include specific pit latrine designs:

Raised pit latrines:

Earth stabilized raised pit latrines are raised to avoid the water from the flood getting into the pit.

Since the pit is raised, the volume of the pit is larger and therefore the periods between emptying the pit are greater.  

However, the space needed for the pit is bigger because there has to be an area to stabilize the soil around the raised part of the pit.

The part of the pit above the ground used for rising it can be both porous and non-porous.

Earth stabilized raised pit latrines are used for all types of flood - river-water flood, rainwater flood, flush flood and tidal flood.

 

This latrine is raised to prevent the floodwater from getting into the pit.

The lining used above ground for preventing sullage leaking is non-porous. The extended part of the pit is often water-sealed by plastering both sides.

This type requires less horizontal space but it needs steps for latrine access.

It is a good solution for flood-prone areas with little space.

 

Pit lining is above the ground level to prevent the flood water from entering the pit. The extension part of the pit is surrounded by a mound for protection.

If the lining is made of permeable soil, the lining can be used as a leaching area. 

It is also used for flood-prone areas with little space.

 

Sand enveloped latrines

A sad filter around the pit prevents the disease-causing microorganisms from getting into the water supply from the pit.

This type of a pit is especially used it drinking water sources are nearby, minimalizing the risks of groundwater contamination.

A 5 cm thick sand envelope is placed around the pit.

The bottom needs to be impermeable and can be made of plastic or puddle clay.

The horizontal distance between the pit and the drinking water source needs to be at least 10 m.

 

This type of latrine can include any of the three previously explained solutions.

The extended part of the lining above ground level is water-sealed or surrounded by earth mound in order to prevent the flood water from intruding the pit.

 

Aditional resource: 

Sanitation strategies for flood-prone areas 

Simple pit latrines